Glyma11g01350 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma11g01350

Feature Type:	gene_model
Chromosome:	Gm11
Start:	793459
stop:	795686
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g01350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13930	AT	Annotation by Michelle Graham. TAIR10: Chalcone and stilbene synthase family protein \| chr5:4488762-4490035 FORWARD LENGTH=395	SoyBase	E_val: 0	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009411	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009629	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gravity	SoyBase	N/A	ISS
GO:0009715	GO-bp	Annotation by Michelle Graham. GO Biological Process: chalcone biosynthetic process	SoyBase	N/A	ISS
GO:0009718	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0009926	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin polar transport	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0031540	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009705	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016210	GO-mf	Annotation by Michelle Graham. GO Molecular Function: naringenin-chalcone synthase activity	SoyBase	N/A	ISS
GO:0016746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
PTHR11877	Panther	HYDROXYMETHYLGLUTARYL-COA SYNTHASE	JGI		ISS
PTHR11877:SF9	Panther	GERANYL GERANYL DIPHOSPHATE SYNTHASE	JGI		ISS
PF00195	PFAM	Chalcone and stilbene synthases, N-terminal domain	JGI		ISS
PF02797	PFAM	Chalcone and stilbene synthases, C-terminal domain	JGI		ISS
UniRef100_I1LG10	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LG10_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q84V87	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chalcone synthase n=1 Tax=Glycine max RepID=Q84V87_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g01350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g01350

Paralog	Evidence	Comments
Glyma01g43880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g01350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g011500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g01350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g01350

Limit To All Plant Sequences

>Glyma11g01350.2   sequence type=transcript   gene model=Glyma11g01350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATGCGGGCATATGCCACCAAACTCATACATAGGTCACAAACTAACAAACAGTCGTAGTAGACGGTGGAAAAATGTATATGTTGGTGTACATTGGTGCATGCACGTGATGATACTCACCTACCCTTCAACCCTCACATACATATAAAATGCCATCTCCTCAAACAAGTTCAAAGCACACCTTCATTTCAACCTCTCTGATTTTGTAATTGAGTTCGATCAAATAGCTCCCAGTACTTTAATTGATTTCTGAATATCATCACTTAATTTGAAGGAAAGATGGTGAGCGTAGCTGAGATCCGCCAGGCACAAAGGGCAGAAGGCCCAGCAACCATCCTTGCCATTGGAACTGCAAACCCACCAAACTGTGTTGATCAGAGCACCTATCCTGACTACTACTTCAGAATCACCAACAGTGAGCACATGACCGAGCTCAAAGAGAAATTCCAGCGCATGTGTATGTGACAAGTCTATGATCAAGAGGAGATATATGTACCTAAACGAAGAGATCTTGAAAGAGAATCCAAACATGTGTGCTTACATGGCACCTTCTTTGGATGCTAGGCAAGACATGGTGGTGGTAGAGGTACCAAAGCTAGGGAAAGAGGCTGCAGTAAAGGCCATAAAGGAGTGGGGCCAGCCAAAGTCAAAGATTACCCACTTGATCTTCTGCACCACCAGTGGTGTTGACATGCCTGGTGCTGATTACCAACTGACCAAACAATTGGGCCTTCGCCCCTATGTGAAGAGGTATATGATGTACCAACAAGGTTGCTTTGCAGGTGGCACGGTTCTTCGTTTGGCCAAGGATTTGGCTGAGAACAACAAGGGTGCACGTGTGCTTGTTGTCTGTTCTGAGATCACTGCAGTCACATTCCGTGGACCAAGTGACACTCACCTTGATAGTCTTGTGGGCCAAGCATTGTTTGGAGATGGAGCTGCTGCTGTCATTGTTGGTTCTGACCCAATTCCACAAGTTGAGAAGCCTTTGTATGAGCTTGTTTGGACTGCACAAACAATTGCTCCAGACAGTGAAGGTGCTATTGATGGACACCTTCGTGAGGTTGGACTCACATTTCACCTCCTCAAGGATGTTCCCGGGATTGTCTCAAAGAACATTGACAAGGCACTTTTTGAGGCTTTCAACCCATTGAACATCTCTGATTACAACTCCATCTTTTGGATTGCACACCCCGGTGGGCCTGCTATTCTTGACCAAGTTGAGCAAAAGTTAGGTCTCAAACCTGAGAAGATGAAGGCCACTAGAGATGTGCTTAGTGAATATGGGAACATGTCAAGTGCTTGTGTTCTTTTCATCTTGGATGAGATGAGGAGGAAATCTGCTGAAAATGGACTTAAAACCACAGGTGAAGGACTTGAATGGGGTGTGTTGTTCGGTTTTGGACCTGGACTTACCATTGAAACTGTTGTTCTGCGCAGTGTGGCCATCTGAGATGCCTAATATATTATTTCATTATTGTGTACCACTTTTCAAACTTGCTGGAGTTTGTAACAACAACAACAACAAAAAAAAAAAAACTCGTTTAGAGTTTGTAATTGTGTACGTTTATATTCAAATAATAATACATGTTCGATGGCCTTTTAGCCTAATTTCATGATAACAGACATTTGTCTGAAAAAAAATAATTCTTTCATGATTTATATTATAAATTTTATCTTAGAAGATACATGATTTACCTCCCTGGATGGCCAACTGCCACAAGTTGCCTCTCTTATGCAAATTAAATGGGTGTGTTTCCTTT

Coding sequences of Glyma11g01350

Limit To All Plant Sequences

>Glyma11g01350.1   sequence type=CDS   gene model=Glyma11g01350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAGCGTAGCTGAGATCCGCCAGGCACAAAGGGCAGAAGGCCCAGCAACCATCCTTGCCATTGGAACTGCAAACCCACCAAACTGTGTTGATCAGAGCACCTATCCTGACTACTACTTCAGAATCACCAACAGTGAGCACATGACCGAGCTCAAAGAGAAATTCCAGCGCATGTGTGACAAGTCTATGATCAAGAGGAGATATATGTACCTAAACGAAGAGATCTTGAAAGAGAATCCAAACATGTGTGCTTACATGGCACCTTCTTTGGATGCTAGGCAAGACATGGTGGTGGTAGAGGTACCAAAGCTAGGGAAAGAGGCTGCAGTAAAGGCCATAAAGGAGTGGGGCCAGCCAAAGTCAAAGATTACCCACTTGATCTTCTGCACCACCAGTGGTGTTGACATGCCTGGTGCTGATTACCAACTGACCAAACAATTGGGCCTTCGCCCCTATGTGAAGAGGTATATGATGTACCAACAAGGTTGCTTTGCAGGTGGCACGGTTCTTCGTTTGGCCAAGGATTTGGCTGAGAACAACAAGGGTGCACGTGTGCTTGTTGTCTGTTCTGAGATCACTGCAGTCACATTCCGTGGACCAAGTGACACTCACCTTGATAGTCTTGTGGGCCAAGCATTGTTTGGAGATGGAGCTGCTGCTGTCATTGTTGGTTCTGACCCAATTCCACAAGTTGAGAAGCCTTTGTATGAGCTTGTTTGGACTGCACAAACAATTGCTCCAGACAGTGAAGGTGCTATTGATGGACACCTTCGTGAGGTTGGACTCACATTTCACCTCCTCAAGGATGTTCCCGGGATTGTCTCAAAGAACATTGACAAGGCACTTTTTGAGGCTTTCAACCCATTGAACATCTCTGATTACAACTCCATCTTTTGGATTGCACACCCCGGTGGGCCTGCTATTCTTGACCAAGTTGAGCAAAAGTTAGGTCTCAAACCTGAGAAGATGAAGGCCACTAGAGATGTGCTTAGTGAATATGGGAACATGTCAAGTGCTTGTGTTCTTTTCATCTTGGATGAGATGAGGAGGAAATCTGCTGAAAATGGACTTAAAACCACAGGTGAAGGACTTGAATGGGGTGTGTTGTTCGGTTTTGGACCTGGACTTACCATTGAAACTGTTGTTCTGCGCAGTGTGGCCATCTGA

>Glyma11g01350.2   sequence type=CDS   gene model=Glyma11g01350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAAGAGGAGATATATGTACCTAAACGAAGAGATCTTGAAAGAGAATCCAAACATGTGTGCTTACATGGCACCTTCTTTGGATGCTAGGCAAGACATGGTGGTGGTAGAGGTACCAAAGCTAGGGAAAGAGGCTGCAGTAAAGGCCATAAAGGAGTGGGGCCAGCCAAAGTCAAAGATTACCCACTTGATCTTCTGCACCACCAGTGGTGTTGACATGCCTGGTGCTGATTACCAACTGACCAAACAATTGGGCCTTCGCCCCTATGTGAAGAGGTATATGATGTACCAACAAGGTTGCTTTGCAGGTGGCACGGTTCTTCGTTTGGCCAAGGATTTGGCTGAGAACAACAAGGGTGCACGTGTGCTTGTTGTCTGTTCTGAGATCACTGCAGTCACATTCCGTGGACCAAGTGACACTCACCTTGATAGTCTTGTGGGCCAAGCATTGTTTGGAGATGGAGCTGCTGCTGTCATTGTTGGTTCTGACCCAATTCCACAAGTTGAGAAGCCTTTGTATGAGCTTGTTTGGACTGCACAAACAATTGCTCCAGACAGTGAAGGTGCTATTGATGGACACCTTCGTGAGGTTGGACTCACATTTCACCTCCTCAAGGATGTTCCCGGGATTGTCTCAAAGAACATTGACAAGGCACTTTTTGAGGCTTTCAACCCATTGAACATCTCTGATTACAACTCCATCTTTTGGATTGCACACCCCGGTGGGCCTGCTATTCTTGACCAAGTTGAGCAAAAGTTAGGTCTCAAACCTGAGAAGATGAAGGCCACTAGAGATGTGCTTAGTGAATATGGGAACATGTCAAGTGCTTGTGTTCTTTTCATCTTGGATGAGATGAGGAGGAAATCTGCTGAAAATGGACTTAAAACCACAGGTGAAGGACTTGAATGGGGTGTGTTGTTCGGTTTTGGACCTGGACTTACCATTGAAACTGTTGTTCTGCGCAGTGTGGCCATCTGA

Predicted protein sequences of Glyma11g01350

Limit To All Plant Sequences

>Glyma11g01350.1   sequence type=predicted peptide   gene model=Glyma11g01350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSVAEIRQAQRAEGPATILAIGTANPPNCVDQSTYPDYYFRITNSEHMTELKEKFQRMCDKSMIKRRYMYLNEEILKENPNMCAYMAPSLDARQDMVVVEVPKLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKQLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIVGSDPIPQVEKPLYELVWTAQTIAPDSEGAIDGHLREVGLTFHLLKDVPGIVSKNIDKALFEAFNPLNISDYNSIFWIAHPGGPAILDQVEQKLGLKPEKMKATRDVLSEYGNMSSACVLFILDEMRRKSAENGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI*

>Glyma11g01350.2   sequence type=predicted peptide   gene model=Glyma11g01350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKRRYMYLNEEILKENPNMCAYMAPSLDARQDMVVVEVPKLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKQLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIVGSDPIPQVEKPLYELVWTAQTIAPDSEGAIDGHLREVGLTFHLLKDVPGIVSKNIDKALFEAFNPLNISDYNSIFWIAHPGGPAILDQVEQKLGLKPEKMKATRDVLSEYGNMSSACVLFILDEMRRKSAENGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain